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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95524002_95543708_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95524002 - 95543708
Intron Length:
19707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGCCTATAAAAA
Flanking Amino Acid:
APAGSMPKRKPTRRSARLSA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
84
0.76
0.7
80.6
24.7
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
43.1
-0.5
1.9
51.64
39.6

Associated Gene:

Gene:
HMGN3
Ensembl Gene ID:
ENSAPLG00000003473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035102
95519060 - 95544077
25018
ENSAPLT00000024897
95520378 - 95544077
23700
ENSAPLT00000003547
95520675 - 95544077
23403