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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95529911_95543708_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95529911 - 95543708
Intron Length:
13798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ACTGACTTAATA
Flanking Amino Acid:
APAGSMPKRKSPEGAEGKDA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
60.1
0.31
1.6
66.38
40.5

Associated Gene:

Gene:
HMGN3
Ensembl Gene ID:
ENSAPLG00000003473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039198
95520357 - 95544077
23721