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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95609262_95611238_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95609262 - 95611238
Intron Length:
1977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATGGTAAACA
Flanking Amino Acid:
QTSNSLVHYQATKKLGSKYA
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.7
81.3
23.7
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
46.3
-0.2
2.6
67.7
44.8

Associated Gene:

Gene:
LCA5
Ensembl Gene ID:
ENSAPLG00000003360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003418
95598931 - 95615955
17025