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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95639124_95656650_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95639124 - 95656650
Intron Length:
17527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTCGTTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTTCGTTCATC
Flanking Amino Acid:
FVASSSGSVAIKKRQQDVVR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
79
0.72
1
69
38.9
Major PPT
73.5
0.53
0.9
66.6
39.8
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
50
-0
2.4
69.44
42.9

Associated Gene:

Gene:
SH3BGRL2
Ensembl Gene ID:
ENSAPLG00000025912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047424
95639079 - 95672377
33299
ENSAPLT00000020485
95639079 - 95673377
34299