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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_956506_964232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
956506 - 964232
Intron Length:
7727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.2
0.81
0.7
82.8
27.4
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
56.9
0.08
1.7
61.64
41.7

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011600
954416 - 1047987
93572