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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95725399_95727141_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95725399 - 95727141
Intron Length:
1743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTCTGGACA
Flanking Amino Acid:
IGIKWVAGGQAFFGAQMNAF
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.5
0.48
1.1
68.6
42.1
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
66.4
0.51
1.4
75.68
35

Associated Gene:

Gene:
ELOVL4
Ensembl Gene ID:
ENSAPLG00000005828
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006033
95724028 - 95752157
28130