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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95733710_95736764_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95733710 - 95736764
Intron Length:
3055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTGACTTTAATA
Flanking Amino Acid:
VLLNFFIFKELFLSSRARGY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81
0.7
0.9
78
40
Minor 5ss
40
-1.1
2.7
50.1
46.4
Minor BPS
66.6
0.52
1.3
68.59
38.2

Associated Gene:

Gene:
ELOVL4
Ensembl Gene ID:
ENSAPLG00000005828
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006033
95724028 - 95752157
28130