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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95736953_95752057_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95736953 - 95752057
Intron Length:
15105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
TCACCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTGCTTCACCC
Flanking Amino Acid:
EFYRWTWSIRDKRVDDWPLM
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.5
0.46
0.8
61.6
34.6
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
52.8
0.07
1.9
70.01
41.9

Associated Gene:

Gene:
ELOVL4
Ensembl Gene ID:
ENSAPLG00000005828
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006033
95724028 - 95752157
28130