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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95789543_95790320_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
95789543 - 95790320
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TGTTGTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGTTGTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.2
0.48
0.9
70.2
40.4
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
49.7
0.06
2.3
74.52
43.3

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426