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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95791781_95795403_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95791781 - 95795403
Intron Length:
3623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
GCTGTCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CAGTCTTTAACT
Flanking Amino Acid:
RILVRFAELKALQDPEEARD
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.4
67.1
44.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.2
0.66
0.9
72
38
Minor 5ss
37.2
-1.4
3.3
44.7
43.5
Minor BPS
75.9
0.89
1.2
80.71
41.4

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426