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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95800365_95801757_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95800365 - 95801757
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTACCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTATTCTAACT
Flanking Amino Acid:
LSDEEKENFAVSSIQESGLQ
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.2
0.57
0.9
67.2
38.6
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
60.1
0.39
1.7
79.47
36.2

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426