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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95805974_95807198_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95805974 - 95807198
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GACTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ATATTCTTCACA
Flanking Amino Acid:
TPSTTSDYMECFRTPVVKNN
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.3
0.68
0.9
76.9
36.9
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
64.6
0.45
1.7
74.2
37.3

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426