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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95810146_95810228_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95810146 - 95810228
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
ACTTTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGAATTTTAACA
Flanking Amino Acid:
HSDKIIRLYNYEITDDHIYM
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.1
0.65
0.9
77.4
36.3
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
65.9
0.49
1.3
69.39
36.5

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426