About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95810381_95811863_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
95810381 - 95811863
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTCTTA
5'SS Class:
weak_major
3'SS Sequence:
CTCTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTGACTTTAAAC
Flanking Amino Acid:
LEAVHTIHEHGIIHSDLKPA
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
60.7
40.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
84.9
0.79
0.8
79.1
32.6
Minor 5ss
46.6
-0.4
3.1
61.8
44.9
Minor BPS
66.6
0.5
1.4
72.33
38.6

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426