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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95812344_95814720_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95812344 - 95814720
Intron Length:
2377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
TCTTTTTTATTA
Flanking Amino Acid:
YGENGKSQSKISPKSDVWSL
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
77.7
33.3
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
83.9
0.76
0.8
85.7
27.3
Minor 5ss
45.2
-0.5
3
64.8
46.5
Minor BPS
61.6
0.36
1.5
69.82
37.7

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426