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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95814898_95815594_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95814898 - 95815594
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATTT
Flanking Amino Acid:
AEKDLQDVLKCCLIRNPKQR
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
57
0.3
1.7
79.21
37.8

Associated Gene:

Gene:
TTK
Ensembl Gene ID:
ENSAPLG00000006086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006329
95789094 - 95817519
28426