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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95883298_95883978_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95883298 - 95883978
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTCCTTTCCA
Flanking Amino Acid:
ADYIFPAFDQIVNEAAKYRY
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
49.3
-0
3.6
83.52
37

Associated Gene:

Gene:
BCKDHB
Ensembl Gene ID:
ENSAPLG00000006305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045591
95864993 - 95903998
39006
ENSAPLT00000006557
95864993 - 95979454
114462