Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95884135_95888466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95884135 - 95888466

Intron Length:

4332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGTAA

5'SS Class:

strong_major

3'SS Sequence:

AATATTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGTACTTTAAAT

Flanking Amino Acid:

AFFAHCPGIKVVIPRSPLQA

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

72.1

35.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.1

0.68

0.9

73.8

40.6

Minor 5ss

-1.7

3.4

46.3

Minor BPS

70.7

0.73

1.4

83.09

37.4

Associated Gene:

Gene:

BCKDHB

Ensembl Gene ID:

ENSAPLG00000006305

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045591

95864993 - 95903998

39006

ENSAPLT00000006557

95864993 - 95979454

114462