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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95888576_95896641_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95888576 - 95896641
Intron Length:
8066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTC
Flanking Amino Acid:
FEPKILYRAAVEQVPVEPYN
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
84.9
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
85.5
34
Minor 5ss
37.6
-1.4
3.5
56.9
47.4
Minor BPS
61.2
0.33
1.7
74.93
36

Associated Gene:

Gene:
BCKDHB
Ensembl Gene ID:
ENSAPLG00000006305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045591
95864993 - 95903998
39006
ENSAPLT00000006557
95864993 - 95979454
114462