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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95900339_95931796_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95900339 - 95931796
Intron Length:
31458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATATTT
Flanking Amino Acid:
LPWDTETVCKSVVKTGRLLI
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
51.2
0.12
1.8
74.4
37

Associated Gene:

Gene:
BCKDHB
Ensembl Gene ID:
ENSAPLG00000006305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006557
95864993 - 95979454
114462