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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95931884_95979301_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95931884 - 95979301
Intron Length:
47418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTGTTAATA
Flanking Amino Acid:
FASEISSTVQEECFLNLEAP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.4
43.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.6
0.6
0.9
73.5
35.8
Minor 5ss
37
-1.5
3.2
49.1
46.7
Minor BPS
60.8
0.33
2
76.1
35.4

Associated Gene:

Gene:
BCKDHB
Ensembl Gene ID:
ENSAPLG00000006305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006557
95864993 - 95979454
114462