Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96049357_96051503_F

Intron Information:

Intron Rank:

132722

Intron Class:

major

Intron Phase:

Intron Coordinates:

96049357 - 96051503

Intron Length:

2147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATCGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

74.2

36.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.3

0.86

0.6

89.2

19.7

Minor 5ss

38.1

-1.3

3.4

55.5

48.6

Minor BPS

64.4

0.53

1.7

84.57

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036279

96049217 - 96098515

49299

ENSAPLT00000026331

96049217 - 96097740

48524