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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96049690_96051503_F

Intron Information:

Intron Rank:
132728
Intron Class:
major
Intron Phase:
Intron Coordinates:
96049690 - 96051503
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021339
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038812
96049217 - 96073201
23985