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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96051821_96072957_F

Intron Information:

Intron Rank:
132723
Intron Class:
major
Intron Phase:
Intron Coordinates:
96051821 - 96072957
Intron Length:
21137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
CATGCCTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
77.7
0.62
0.9
72.4
37.3
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
50.4
-0
1.9
60.61
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021339
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038812
96049217 - 96073201
23985
ENSAPLT00000036279
96049217 - 96098515
49299
ENSAPLT00000026331
96049217 - 96097740
48524