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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96062343_96062907_R

Intron Information:

Intron Rank:
152329
Intron Class:
major
Intron Phase:
Intron Coordinates:
96062343 - 96062907
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGCGT
5'SS Class:
major
3'SS Sequence:
CTCCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAA
U12 Branch Point Sequence:
CAGTGGTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.1
53.9
44.7
Major BPS
48.7
-0
1.2
55.4
40.4
Major PPT
82.6
0.73
0.7
79.8
25.5
Minor 5ss
25.3
-2.8
3.5
38.7
46.4
Minor BPS
42.4
-0.5
2.4
52.92
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029558
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020351
96060598 - 96063107
2510