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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96073129_96097554_F

Intron Information:

Intron Rank:
132724
Intron Class:
major
Intron Phase:
Intron Coordinates:
96073129 - 96097554
Intron Length:
24426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACCTAACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATTACCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.5
0.39
0.9
63.1
37.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
67.4
0.62
1.9
87.65
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021339
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026331
96049217 - 96097740
48524