Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96165253_96166224_F

Intron Information:

Intron Rank:

130139

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

96165253 - 96166224

Intron Length:

972

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CGGTGTTAAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTGTTATTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.6

93.5

20.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

55.7

0.13

1.1

Minor 5ss

38.4

-1.3

2.8

52.3

44.3

Minor BPS

59.4

0.37

1.9

80.43

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030316

96165210 - 96169820

4611