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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96396549_96399054_R

Intron Information:

Intron Rank:
155233
Intron Class:
major
Intron Phase:
Intron Coordinates:
96396549 - 96399054
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
AGTGACATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
85.3
0.79
0.8
76.9
37.3
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
45
-0.3
2.1
65.43
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026306
96395813 - 96422848
27036