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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96399123_96422660_R

Intron Information:

Intron Rank:
155234
Intron Class:
major
Intron Phase:
Intron Coordinates:
96399123 - 96422660
Intron Length:
23538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
GCTACTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
81.8
0.71
0.9
72.6
42.4
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
44
-0.3
2.2
60.6
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026306
96395813 - 96422848
27036