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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_964399_995539_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
964399 - 995539
Intron Length:
31141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCTATATTT
Flanking Amino Acid:
KKNGITKGMKKNGVSNGTLY
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
81.2
35.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.6
0.25
1.9
77.48
39.3

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011600
954416 - 1047987
93572
ENSAPLT00000048085
964035 - 1047987
83953
ENSAPLT00000021081
964035 - 1045732
81698