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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96478295_96480495_F

Intron Information:

Intron Rank:
127240
Intron Class:
major
Intron Phase:
Intron Coordinates:
96478295 - 96480495
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.8
0.72
0.8
73.1
37.1
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018613
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046264
96474915 - 96480901
5987