Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96504823_96505403_R

Intron Information:

Intron Rank:

131221

Intron Class:

major

Intron Phase:

Intron Coordinates:

96504823 - 96505403

Intron Length:

581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TTTGTTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

92.3

0.95

0.7

87.5

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

60.3

0.32

1.7

74.12

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041736

96504119 - 96506208

2090

ENSAPLT00000038365

96504119 - 96507841

3723