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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96504823_96505546_R

Intron Information:

Intron Rank:
131223
Intron Class:
major
Intron Phase:
Intron Coordinates:
96504823 - 96505546
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017819
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040308
96504119 - 96506208
2090