Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96547254_96571214_R

Intron Information:

Intron Rank:

132237

Intron Class:

major

Intron Phase:

Intron Coordinates:

96547254 - 96571214

Intron Length:

23961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTACA

5'SS Class:

major

3'SS Sequence:

CTATTCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.2

71.8

39.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

0.74

0.8

77.3

31.1

Minor 5ss

40.5

-1.1

2.8

52.7

43.9

Minor BPS

66.5

0.6

1.9

87.15

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028449

96546666 - 96571331

24666