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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96659396_96664572_F

Intron Information:

Intron Rank:
146448
Intron Class:
major
Intron Phase:
Intron Coordinates:
96659396 - 96664572
Intron Length:
5177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TAATCCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
82.4
0.73
0.8
80.6
31.4
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
60.8
0.32
1.8
69.82
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028914
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046163
96658875 - 96704128
45254
ENSAPLT00000041395
96658875 - 96704128
45254
ENSAPLT00000023485
96658875 - 96671162
12288
ENSAPLT00000019137
96658875 - 96670839
11965