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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96659396_96687097_F

Intron Information:

Intron Rank:
146453
Intron Class:
major
Intron Phase:
Intron Coordinates:
96659396 - 96687097
Intron Length:
27702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71
0.47
0.9
63
38.6
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028914
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023900
96658875 - 96704128
45254