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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96659396_96723451_F

Intron Information:

Intron Rank:
146450
Intron Class:
major
Intron Phase:
Intron Coordinates:
96659396 - 96723451
Intron Length:
64056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.5
0.42
1
66.5
33.3
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
82.2
1.09
1.1
88.69
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028914
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021925
96658875 - 96723529
64655