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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96783906_96788974_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
96783906 - 96788974
Intron Length:
5069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAA
Flanking Amino Acid:
PTKVARLGNAWSSSSRSALP
Intron Amino Acid Position:
1198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
72.8
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67
0.38
1.1
68.7
40.4
Minor 5ss
46.7
-0.3
2.5
57.4
41.8
Minor BPS
66.3
0.51
1.5
76.26
34.1

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003318
96774097 - 96827126
53030