About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96789131_96790414_R


Intron Information:

Intron Rank:
24

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
96789131 - 96790414

Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTGGTAAA

5'SS Class:
major

3'SS Sequence:
CAATTCACGGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATCTTAT

U12 Branch Point Sequence:
TTCTTTGCAATA

Flanking Amino Acid:
KCGTMPKTNSRMASHGIKLS

Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.6
0.6
1.2
75.3
36.2

Major BPS
82.6
0.81
0.8
71.7
36

Major PPT
60.8
0.24
1.1
55.7
39.5

Minor 5ss
30
-2.3
2.7
33.5
41.8

Minor BPS
46.7
-0.2
2.1
62.08
39.4

Associated Gene:

Gene:
IBTK

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

96774097 - 96827126
53030

96774097 - 96827126
53030