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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96795108_96795924_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
96795108 - 96795924
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
GLNMAALLEARTLDVLSDEV
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
72
0.5
1.1
75.2
38.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026229
96774097 - 96827126
53030
ENSAPLT00000003318
96774097 - 96827126
53030