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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96796043_96797102_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96796043 - 96797102
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
GATTCTTTGAGT
Flanking Amino Acid:
EMCEVAIAEKLTLKNAAELL
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.5
33.5
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
38.8
-1.3
2.9
49.9
39.7
Minor BPS
63.4
0.5
1.6
76.55
40.2

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026229
96774097 - 96827126
53030
ENSAPLT00000003318
96774097 - 96827126
53030