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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96797676_96799364_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
96797676 - 96799364
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTTATTTTACCT
Flanking Amino Acid:
HSMLSSSWIEASCCSALEMP
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81
0.7
0.8
78.8
34.4
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
58.5
0.34
1.7
75.45
41.9

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026229
96774097 - 96827126
53030
ENSAPLT00000003318
96774097 - 96827126
53030