About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96802394_96803204_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
96802394 - 96803204
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATGG
Flanking Amino Acid:
FAVLQSDPKTSLYEIPSVSL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.6
0.71
0.8
74.3
40.5
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
55.1
0.02
2
64.98
43.2

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026229
96774097 - 96827126
53030
ENSAPLT00000003318
96774097 - 96827126
53030