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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96803380_96804528_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96803380 - 96804528
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAGC
Flanking Amino Acid:
EEGKKTSEKKELVSSPQNAS
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.7
0.76
0.9
82.5
32.8
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
72.4
0.68
1.5
81.25
33.5

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026229
96774097 - 96827126
53030