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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96803383_96804528_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96803383 - 96804528
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTTCTTCACA
Flanking Amino Acid:
EEGKKTSEKKAELVSSPQNA
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
68.4
0.57
1.7
78.35
38.8

Associated Gene:

Gene:
IBTK
Ensembl Gene ID:
ENSAPLG00000003222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003318
96774097 - 96827126
53030