About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96815327_96816680_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
96815327 - 96816680

Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTAGGAAAT

5'SS Class:
major

3'SS Sequence:
TTTTTCATTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
ATATTTTTCATT

Flanking Amino Acid:
RPIHVVFKKTDPTEVYTWGN

Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.1
0.62
1
73.4
37.3

Major BPS
100
1.24
0.5
100
0

Major PPT
90.5
0.91
0.7
85.9
26.9

Minor 5ss
33.9
-1.8
3.3
45.4
44

Minor BPS
56.7
0.29
1.7
74.15
37.4

Associated Gene:

Gene:
IBTK

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

96774097 - 96827126
53030

96774097 - 96827126
53030