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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9682056_9682920_R

Intron Information:

Intron Rank:
143925
Intron Class:
major
Intron Phase:
Intron Coordinates:
9682056 - 9682920
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CCTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATGCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
100
1.24
0.5
100
0
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
58.9
0.36
1.8
72.6
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024713
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038527
9681827 - 9683281
1455