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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9687267_9692033_R

Intron Information:

Intron Rank:
138306
Intron Class:
major
Intron Phase:
Intron Coordinates:
9687267 - 9692033
Intron Length:
4767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTGCTCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.2
0.48
0.8
69.5
36.7
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
54.5
-0
1.4
54.75
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019494
9687141 - 9693206
6066