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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96882486_96884046_F

Intron Information:

Intron Rank:
130291
Intron Class:
major
Intron Phase:
Intron Coordinates:
96882486 - 96884046
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
CATACCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
70
0.5
1
59.6
38.6
Major PPT
77
0.61
0.9
68.5
42.1
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
51.5
0.13
2
69.75
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020083
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042659
96882062 - 96889193
7132