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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_96989685_96992077_R

Intron Information:

Intron Rank:
153387
Intron Class:
major
Intron Phase:
Intron Coordinates:
96989685 - 96992077
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.9
86.5
31.5
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025979
96989293 - 96992609
3317